Package: phyloatlas 0.1.0

Francisco Richter

phyloatlas: Access to the 'Phylo-Species Atlas' of Empirical Phylogenies

Provides convenience functions to fetch standardized phylogenetic trees and per-tree provenance metadata from the 'Phylo-Species Atlas' <https://github.com/franciscorichter/phylo-species-atlas> directly from R. The atlas is a curated collection of empirical species-level trees covering Bacteria, Archaea, and Eukaryota, organized into 62 partitions of life with tip labels normalized against a shared dictionary of standardized species identifiers. Functions load any of the standardized trees with species labels resolved from the dictionary, list available trees, and inspect per-tree provenance.

Authors:Francisco Richter [aut, cre]

phyloatlas_0.1.0.tar.gz
phyloatlas_0.1.0.zip(r-4.7)phyloatlas_0.1.0.zip(r-4.6)phyloatlas_0.1.0.zip(r-4.5)
phyloatlas_0.1.0.tgz(r-4.6-any)phyloatlas_0.1.0.tgz(r-4.5-any)
phyloatlas_0.1.0.tar.gz(r-4.7-any)phyloatlas_0.1.0.tar.gz(r-4.6-any)
phyloatlas_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phyloatlas/json (API)
NEWS

# Install 'phyloatlas' in R:
install.packages('phyloatlas', repos = c('https://franciscorichter.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/franciscorichter/phylo-species-atlas/issues

On CRAN:

Conda:

4.40 score 4 exports 5 dependencies

Last updated from:66123e0019. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK123
source / vignettesOK150
linux-release-x86_64OK99
macos-release-arm64OK86
macos-oldrel-arm64OK109
windows-develOK77
windows-releaseOK128
windows-oldrelOK88
wasm-releaseOK98

Exports:atlas_clear_cacheatlas_infolist_treesload_atlas_tree

Dependencies:apedigestlatticenlmeRcpp

Getting started with phyloatlas

Rendered fromphyloatlas.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-05-31
Started: 2026-05-31