Package: phyloatlas
Type: Package
Title: Access to the 'Phylo-Species Atlas' of Empirical Phylogenies
Version: 0.1.0
Authors@R: 
    person(given = "Francisco",
           family = "Richter",
           email = "richtf@usi.ch",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0924-4613"))
Description: Provides convenience functions to fetch standardized
        phylogenetic trees and per-tree provenance metadata from the
        'Phylo-Species Atlas'
        <https://github.com/franciscorichter/phylo-species-atlas>
        directly from R. The atlas is a curated collection of empirical
        species-level trees covering Bacteria, Archaea, and Eukaryota,
        organized into 62 partitions of life with tip labels normalized
        against a shared dictionary of standardized species
        identifiers. Functions load any of the standardized trees with
        species labels resolved from the dictionary, list available
        trees, and inspect per-tree provenance.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/franciscorichter/phylo-species-atlas,
        https://franciscorichter.github.io/phylo-species-atlas/
BugReports: https://github.com/franciscorichter/phylo-species-atlas/issues
Depends: R (>= 4.0)
Imports: ape, utils
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), withr
Config/testthat/edition: 3
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Repository: https://franciscorichter.r-universe.dev
Date/Publication: 2026-07-01 17:05:50 UTC
RemoteUrl: https://github.com/franciscorichter/phylo-species-atlas
RemoteRef: HEAD
RemoteSha: b239881edbcec018dc1b8353623ea94a657b931f
RemoteSubdir: phyloatlas
NeedsCompilation: no
Packaged: 2026-07-01 17:21:08 UTC; root
Author: Francisco Richter [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0924-4613>)
Maintainer: Francisco Richter <richtf@usi.ch>