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  "Title": "Access to the 'Phylo-Species Atlas' of Empirical Phylogenies",
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  "Authors@R": "person(given = \"Francisco\",\nfamily = \"Richter\",\nemail = \"richtf@usi.ch\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0924-4613\"))",
  "Description": "Provides convenience functions to fetch standardized\nphylogenetic trees and per-tree provenance metadata from the\n'Phylo-Species Atlas'\n<https://github.com/franciscorichter/phylo-species-atlas>\ndirectly from R. The atlas is a curated collection of empirical\nspecies-level trees covering Bacteria, Archaea, and Eukaryota,\norganized into 62 partitions of life with tip labels normalized\nagainst a shared dictionary of standardized species\nidentifiers. Functions load any of the standardized trees with\nspecies labels resolved from the dictionary, list available\ntrees, and inspect per-tree provenance.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "URL": "https://github.com/franciscorichter/phylo-species-atlas,\nhttps://franciscorichter.github.io/phylo-species-atlas/",
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  "Repository": "https://franciscorichter.r-universe.dev",
  "Date/Publication": "2026-10-18 15:59:18 UTC",
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  "Author": "Francisco Richter [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0924-4613>)",
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    "author": "claude-code/opus-5-5 <franciscorichter@gmail.com>",
    "committer": "claude-code/opus-5-5 <franciscorichter@gmail.com>",
    "message": "Release v1.1.1: the monthly watch code (code/living/) and decision D65\n\ncode/living/ holds watch.py, curate.py, their README and primary_trees.csv,\nwhich the paper's new Methods section on continuous data collection cites.\npaper/revision/DECISIONS.md gains D65 (two reference trees per group, decided\nby Francisco Richter); reproduce_paper.py counts the model's decisions only,\nexcluding rows marked as decided by Francisco.\n",
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    "description": "Mathematical Engineer and Postdoctoral researcher at the Institute of Computing at the Università della Svizzera italiana."
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